analyzePathwayGlobalTest

pathway enrichment by global test

AnalyzePathwayHyperTest.

Usage

analyzePathwayGlobalTest(pathway.matrix, pathway.group, filter_Metabolism = F)

analyzePathwayHyperTest(kegg.id = "C00024", filter_Metabolism = F)

Arguments

pathway.matrix

should be a matrix, sample as rowname, kegg id as colname

pathway.group

should be a vector with length same as nrow(pathway.matrix), indicate group of sample

filter_Metabolism

only output pathway of Metabolism

kegg.id

kegg.id

Value

global.test.result

DF

Functions

• analyzePathwayGlobalTest(): analyzePathwayGlobalTest

• analyzePathwayHyperTest(): analyzePathwayHypertest