Reads a curated assignment table (e.g. compare_pave_assigment.xlsx) and
adds metabolite names from chem_lib / cpdb for
compound_id_pave and compound_id_trace.
Usage
compare_pave_trace_diff_metabolite_data(
assignment,
chem_lib_path = NULL,
cpdb_path = NULL
)
Arguments
- assignment
Path to assignment xlsx or data frame with feature_id,
type, reason, compound_id_pave, and
compound_id_trace.
- chem_lib_path
Optional path to chem_lib.xlsx.
- cpdb_path
Optional TRACE compound-database xlsx with compound_id
and name. Used when chem_lib_path is NULL.
Value
Data frame with columns feature_id, type,
reason, PAVE_metabolite_id, PAVE_metabolite_name,
TRACE_metabolite_id, and TRACE_metabolite_name.