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Uses only the curated assignment table (CN formulas + TRACE seed) plus the TRACE CN bundle stored in `object@advancedAna$TRACE_temp`.

Usage

compare_pave_wrong_cn_pave_demos(
  assignment,
  object,
  i.pol = 0,
  reason = "wrong CN in PAVE",
  require_trace_only = FALSE,
  require_n_nonzero = TRUE,
  min_trace_bundle = 3L
)

Arguments

assignment

Manual-review assignment table or xlsx path.

object

MSdev object with TRACE CN network results.

i.pol

Polarity index (0 = negative).

reason

Manual-review reason label.

require_trace_only

If `TRUE`, require `lib_assignment == "TRACE_only"` when that column exists.

require_n_nonzero

If `TRUE`, require `N > 0` in both PAVE and TRACE CN formulas from the assignment table.

min_trace_bundle

Minimum TRACE CN-bundle nodes (default 3).

Value

A list with demos and summary.