Select wrong-CN demos from an assignment table
Source:R/compare.pave.R
compare_pave_wrong_cn_pave_demos.RdUses only the curated assignment table (CN formulas + TRACE seed) plus the TRACE CN bundle stored in `object@advancedAna$TRACE_temp`.
Usage
compare_pave_wrong_cn_pave_demos(
assignment,
object,
i.pol = 0,
reason = "wrong CN in PAVE",
require_trace_only = FALSE,
require_n_nonzero = TRUE,
min_trace_bundle = 3L
)Arguments
- assignment
Manual-review assignment table or xlsx path.
- object
MSdev object with TRACE CN network results.
- i.pol
Polarity index (
0= negative).- reason
Manual-review reason label.
- require_trace_only
If `TRUE`, require `lib_assignment == "TRACE_only"` when that column exists.
- require_n_nonzero
If `TRUE`, require `N > 0` in both PAVE and TRACE CN formulas from the assignment table.
- min_trace_bundle
Minimum TRACE CN-bundle nodes (default
3).