Plot CN bundle correlation and m/z error for PAVE vs TRACE groups — plot_compare_pave_cn_bundle • TRACE

Plot CN bundle correlation and m/z error for PAVE vs TRACE groups

Usage

plot_compare_pave_cn_bundle(
  pave.trace.merged,
  object,
  i.pol = 0,
  mz_error = c("max", "mean"),
  return.data = FALSE
)

Arguments

pave.trace.merged: Data frame from a PAVE/TRACE feature merge.
object: MSdev object with TRACE results in `object@advancedAna$TRACE_temp`.
i.pol: Polarity index. `0` for negative and `1` for positive.
mz_error: Character. Use `"max"` or `"mean"` absolute m/z error (ppm) across bundle edges.
return.data: Logical. If `TRUE`, return a list with `plot`, `p_cor`, `p_mz`, and `data`.

Value

A patchwork object combining correlation and m/z error boxplots, or a list when `return.data = TRUE`.