Boxplot + points: dynamic-filter vs overlap CN-bundle errors — plot_compare_pave_lib_assignment_error • TRACE

Boxplot + points: dynamic-filter vs overlap CN-bundle errors

Usage

plot_compare_pave_lib_assignment_error(
  assignment,
  object,
  i.pol = 0,
  mz_error = c("max", "mean"),
  types = c("dynamic filter", "overlap"),
  return.data = FALSE
)

Arguments

assignment: Path to assignment xlsx or data frame (see [compare_pave_lib_assignment_error_data()]).
object: MSdev object with TRACE CNfinder results.
i.pol: Polarity index. `0` for negative and `1` for positive.
mz_error: Use `"max"` or `"mean"` across CN-bundle edges.
types: type labels to compare.
return.data: If `TRUE`, return list with `plot`, `p_mz`, `p_rt`, `data`.

Value

A patchwork object with m/z and RT error panels, or a list when `return.data = TRUE`.