Bioinformatic analysis — plotPathwayEnrichment • MSdev

PlotPathwayEnrichment.

Usage

plotPathwayEnrichment(
  pathway.table,
  top = 20,
  method = c("set1", "set2", "bubble", "class"),
  title = NULL
)

Arguments

pathway.table: table fromanalyzePathwayGlobalTest() or analyzePathwayHyperTest()
top: top n
method: plot style, option: "set1","set2","bubble","path_classify1"
title: title of ggplot

Value

ggplot

Functions

plotPathwayEnrichment(): plotPathwayEnrichment

Examples

### pathway analysis
path <- analyzePathwayHyperTest()
#> Error in loadNamespace(x): there is no package called ‘MSdb’
p <- plotPathwayEnrichment(path)
#> Error: object 'path' not found